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AuthorCommitMessageCommit dateIssues
Quasar JaroszQuasar Jarosz
004501ea655Update api masking/visualreview to optionally return masked onlyAdded awaiting_review bool parameter to masking/visualreview route. When true, it will return only those IECs that are awaiting review. When false, it will return everything (same as before).
Michael RutherfordQuasar JaroszMichael Rutherford
e11ecd20c7dMPull request #384: Fix optionalityMerge in PT/oneposda from mirabelle_work to master * commit '9991b174be0c65d121f0f0dc0afbcc65cd02a5ff': Fix optionality
Michael RutherfordMichael Rutherford
9991b174be0Fix optionality
Quasar JaroszQuasar Jarosz
c5c28e0233dParse image values for Segmentation Storage
Michael RutherfordQuasar JaroszMichael Rutherford
989e4623cc5MPull request #383: Mirabelle workMerge in PT/oneposda from mirabelle_work to master * commit 'b97e13d45babfa6b389e53b515190b2d694aacff': Fix base return model Add FOR to IEC info endpoint, add modality and series uid to other_iecs_in_for endpoint.
Michael RutherfordMichael Rutherford
b97e13d45baFix base return model
Michael RutherfordMichael Rutherford
5fdfb58aeadAdd FOR to IEC info endpoint, add modality and series uid to other_iecs_in_for endpoint.
Quasar JaroszQuasar Jarosz
ee9fc118a82Switch ImportFromFaspex.py back to md5sum
Quasar JaroszQuasar Jarosz
05c479c31cbAdd Modality to wadsors iec metadata
Quasar JaroszQuasar Jarosz
811ddf42c5eOnly return iop/ipp if it exists, for wadors routes
Quasar JaroszQuasar Jarosz
90508a82a17Always return image_geometry even if it's missing
Michael RutherfordMichael Rutherford
7a10b946f84Cleanup IEC info endpoint query and add modality
Quasar JaroszQuasar Jarosz
b254a156693Really fix nifti vr endpoint input variable
Michael RutherfordMichael Rutherford
c46ad64c044Fix nifti vr endpoint input variable
Michael RutherfordMichael Rutherford
04a890dcfeaAdded endpoint to retrieve Nifti VR files
Quasar JaroszQuasar Jarosz
9ec41d6a1a0Update ImportInPlaceFromPublic: add visiblity list and fix digest issue
Quasar JaroszQuasar Jarosz
28843a710abAdd Series Description to IEC info endpointThis relates to PT-1262PT-1262
Quasar JaroszQuasar Jarosz
2f7e01afd26Add reviewfiles/download endpoint to IEC route
Quasar JaroszQuasar Jarosz
c3cbb2f6b2aAdd new Copy Skeleton to ApplyMasksThis resolves PT-1260PT-1260
Quasar JaroszQuasar Jarosz
ca697ed76c1Add other_iecs_in_for endpoint to IEC route
Quasar JaroszQuasar Jarosz
32b86fc1b95Fix mistake in row file
Quasar JaroszQuasar Jarosz
42b307d69f0Add new ImportFromFaspex script and operation
Quasar JaroszQuasar Jarosz
07ee207b713Add CopySeriesFromOtherTimepoint.py scriptThis is basically the opposite of CopyPriorTimepointExcludingSeries; It copies series from another timepoint but includes only the supplied set of series.
Quasar JaroszQuasar Jarosz
2be87ffef94Improve root finding in import in-place
Quasar JaroszQuasar Jarosz
b0fcd13fc68Add Site Name parameter to ImportInPlaceFromPublic.py
Quasar JaroszQuasar Jarosz
0b564c0a364Handle old NBIA paths in ImportInPlaceFromPublic.py
Quasar JaroszQuasar Jarosz
cb190587e0bUpdate ImportInPlaceFromPublic to copy digest from NBIA
Quasar JaroszQuasar Jarosz
3b96c0491cbUpdate ImportInPlaceFromPublic to fix bugThis commit changes to using fetchall() to request all the rows from the MySQL database into memory rather than looping over the cursor directly, due to a timeout issue that was being encountered when trying to copy a large collection.
Quasar JaroszQuasar Jarosz
50ca0570d8dAdd visibility parameter to ImportInPlaceFromPublic script
Quasar JaroszQuasar Jarosz
5c4e499eec9Add fallback to iecs/info route, for IECs with no rendering
Quasar JaroszQuasar Jarosz
ba7fa7611bcAdd skip_rendering option to VisualReviewFromTimepoint script
Quasar JaroszQuasar Jarosz
7a2386f7c3aImprove temp paths in Nopperabo
Quasar JaroszQuasar Jarosz
8033ac40466Set FlagVRForMasking.py to be executable
Quasar JaroszQuasar Jarosz
d784ba5addbMPull request #378: Add missing Pathology queryMerge in PT/oneposda from new_pathology_import to master * commit 'e2ac596f189a79c630911530a517fd1ae8d6dad8': Add missing Pathology query
Sonya UtechtQuasar JaroszSonya Utecht
e5c13fd3832MPull request #377: PathBulkMerge in PT/oneposda from pathBulk to master * commit 'f6a48f4a1a73bee3211c652772be8c000164aa83': new bulk edit options way to remove labels,macros,metadata, from all of the files in an activity; in progress
Sonya UtechtQuasar JaroszSonya Utecht
a26f55456edMPull request #372: PathologyQ125Merge in PT/oneposda from pathologyQ125 to master * commit 'e26bdd8241c9b2fcb4828a42eab686e918cddb66': output changed to edited, subfolders re-allowed output folder changes
Sonya UtechtSonya Utecht
f6a48f4a1a7new bulk edit options
Michael RutherfordMichael Rutherford
bbb0659128aAdded script to flag all files in VR for masking
Michael RutherfordQuasar JaroszMichael Rutherford
a92f14c9b4fMPull request #375: Generalized the Apply masks to apply edit/delete operations to any functionMerge in PT/oneposda from PT-1257-apply-masks-change to master * commit 'f6b902c6d1860a34669e4a9e3e1f056722bd9f03': Generalized the Apply masks to apply edit/delete operations to any functionPT-1257
Quasar JaroszQuasar Jarosz
e1c1e707d06Fix for ImportInPlaceFromPublic
Quasar JaroszQuasar Jarosz
d380d027c0ecp
Michael RutherfordMichael Rutherford
f6b902c6d18Generalized the Apply masks to apply edit/delete operations to any function
Quasar JaroszQuasar Jarosz
4bc8d41bb69Add ImportInPlaceFromPublic to workflow
Quasar JaroszQuasar Jarosz
4f3b59a4f9dFinal version of ImportInPlaceFromPublic.py
Quasar JaroszQuasar Jarosz
e8a4f45c248First version of ImportInPlaceFromPublic.py
Quasar JaroszQuasar Jarosz
b537af0a621Add visual_review_instance_id to iecs/info endpoint
Quasar JaroszQuasar Jarosz
516ab16521eNew endpoint to select a random IEC from a VR that needs masking review
Quasar JaroszQuasar Jarosz
0f4818f52fdAdd new endpoint visualreview/:vr/nextThis will be used (likely temporarily) to select the "next" IEC in the VR that needs to be worked on (that is flagged for masking, and has a masking_status of 'created').
Sonya UtechtSonya Utecht
040b31918b7way to remove labels,macros,metadata, from all of the files in an activity; in progress
Quasar JaroszQuasar Jarosz
a1df116a5b6Change to use simpler method to determine volumetricThe old method was clever but causing trouble with many volumes that have duplicated frames or were missing frames. This new simpler method is temporary.