Make some changes necessary to support Cornerstone v2.0 NiftiCornerstone 2.0 made some major changes in how Nifti files were loaded
and processed, and one of those is that it determines if the file is
compressed by looking at the end of the url (.gz vs not). To support
proper handling of these files, this commit adds an alias to the
files/data endpoint of files/data.gz. This does nothing other than trick
the Cornerstone code into believing the file is co...
Pull request #369: Seg linkage branchMerge in PT/oneposda from seg_linkage_branch to master
* commit '902a8d47903a328afeb3d7d055d50820e5783184':
changed to count None or empty string ref image FOR as valid success
changed to use BackgroundEditTp
None to empty
attempting to get edit sheet running fully
Edit skeleton report added
added FOR check, requires the image files have a FOR
changed workflow
working linkage s...
Add new experimental Dciodvfy processing scriptThis also adds a second report to the standard BackgroundDciodvfyTp,
which contains the output of the new script, for comparison.
Update BackgroundFixStructLinkagesTp.pl to use TestStructFixerTpTestStructFixerTp.pl already exists, but wasn't actually being called by
the BackgroundFixStructLinkagesTp.pl script. Hopefully this will allow
it to work now.
Fix query for reviewfiles endpointThe query was joining file_image and file_image_geometry,
however only one of these should be joined, not both. Having
both was causing some odd duplication in the results.
Pull request #367: WadorsMerge in PT/oneposda from wadors to master
* commit '15cecc223516815c27e1fadf9464173d13b55c9f':
Add IEC-based endpoints and refactor somewhat
Add new wadsors endpoint
Add new script to populate seg bitmaps.This is a new version of AddPngToSegSliceBitmap.pl that can be run as a
background process, allowing anyone to execute it.
This resolves PT-1123
Pull request #362: Added frame logic to the masking review files endpointMerge in PT/oneposda from feature/TADMIN-1381-integrate-cornerstone-viewer-into-visual-review-workflow to master
* commit '8a3e218a7708489716e0b3be51f5c8c58385b037':
Added frame logic to the masking review files endpoint
Pull request #361: Feature/TADMIN-1381 integrate cornerstone viewer into visual review workflowMerge in PT/oneposda from feature/TADMIN-1381-integrate-cornerstone-viewer-into-visual-review-workflow to master
* commit '2de0aa93ced152ed0e1524b35a00d474e7f2c6b5':
Added new query to workflow
Removed unneeded button definition
Standardized api calls
Added IEC info api call
Add Mirabelle review button to VisualReviewStatusDetails query
Added API call to update IEC VR status
Add Mirabelle review button to VisualReviewStatusDetails querywhich opens the IEC in Mirabelle.
Also adds a new query, VisualReviewStatusDetailsByPatient which allows
filtering of visual reviews by patient_id (using like).
Add error message to Quince for multiframe filesDue to other fixes in the db, Quince will now display the first frame of
multiframe files, but gives no indication that it is a multiframe, which
could lead to curators missing the other frames. This temporary fix just
disables the display of multiframe files entirely, instead displaying an
error message (Multiframe File; Use other viewer).
Quasar Jarosz
Sonya Utecht
Sonya Utecht
Michael Rutherford