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oneposda

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AuthorCommitMessageCommit dateIssues
Quasar JaroszQuasar Jarosz
a67ba0f688fUpdate NewApplyMasks to scan all elements for references
Quasar JaroszQuasar Jarosz
8b77f1d6378Fix bug in IA
Quasar JaroszQuasar Jarosz
3b3aa84d557Update InitialAnonymizer (IA) script to allow 0 date shift
Quasar JaroszQuasar Jarosz
6295616cd3dadd better temp dir and fix exit codes
Quasar JaroszQuasar Jarosz
73e732af177Add new /activities endpoint for UI operations involving ActivitiesThis adds a set of endpoints under /v1/activities that will be useful for new and exsiting UI code. This includings being able to list all activities, list timeline entries for an activity, list details about a specific timeline entry, and retrieve the input and output data for a given timeline entry / subprocess.
Quasar JaroszQuasar Jarosz
b10bc03962fcp
Quasar JaroszQuasar Jarosz
cc9fd322df3cp
Quasar JaroszQuasar Jarosz
0be4ee76ca3cp
Quasar JaroszQuasar Jarosz
a7f8510406cMore fixes
Quasar JaroszQuasar Jarosz
791fee5ed6eFixes
Quasar JaroszQuasar Jarosz
09577da1681Add NewApplyMasks to Workflow menu
Quasar JaroszQuasar Jarosz
1550f482165Introduce NewApplyMasks, a complete rewrite of ApplyMasksThis version handles orphans and referencing files, and does almost all processing itself. It does still generate an edit skeleton for moving the pre-masked files, as that operation needs to have an email to link to (so this script cannot create a new timepoint in a second activity without causing issues).
Quasar JaroszQuasar Jarosz
b69d046d95aFix bug with Public Copy Status Report URLWay back, the individual ABC would be running on a port like 6000 but the API was on 80 so the port was being forced to 80. That's no longer an issue, and also the user might be on https so 80 may break the link. This commit just removes the port entirely.
Sonya UtechtQuasar JaroszSonya Utecht
d556faf6b50MPull request #389: Feature/parsing of histopathologyMerge in PT/oneposda from feature/parsing-of-histopathology to master * commit '63999bbee2d3a15c03c2b796dd0d8d373943c3dc': path bugfix for output bucket change button to call the export operation migration file cleanup initial concept test
Sonya UtechtSonya Utecht
63999bbee2dpath bugfix for output bucket change
Quasar JaroszQuasar Jarosz
eb553c837fcFix mistake in commands being passed to masker
Quasar JaroszQuasar Jarosz
80f821ba7a2Add noise and fill options to Nopperabo and bump Masker version
Quasar JaroszQuasar Jarosz
f134af4e866Add fill and noise to masking/parameters endpoint schema
Quasar JaroszQuasar Jarosz
b567c76e2baUpdate masking/set_parameters to to upsert masking table
Quasar JaroszQuasar Jarosz
c3469fe1250Bump masker version, add gelf logging, and masker version number
Sonya UtechtSonya Utecht
706d1ff193bbutton to call the export operation
Sonya UtechtSonya Utecht
843b1f9c687migration file cleanup
Quasar JaroszQuasar Jarosz
a647b191091Fix Baseline and Dual versions of BackgroundPrivateDispositionsThere was a change to the number of arguments another script takes, and these needed to be updated to pass that empty argument.
Sonya UtechtSonya Utecht
44bd25e527cadded title to the image descriptions that are removed
Michael RutherfordMichael Rutherford
cb71a5c5e54Update masker call to accommodate coordinates from source
Sonya UtechtSonya Utecht
6c51f60cc9einitial concept test
Quasar JaroszQuasar Jarosz
576d96802edFix mistake that broke BackgroundPrivateDispositionsTp.pl in last commit
Quasar JaroszQuasar Jarosz
8c38ac9d03aAdd override_site_name to BackgroundPrivateDispositionsTp
Michael RutherfordQuasar JaroszMichael Rutherford
5586e18add2MPull request #386: Fix file details api call to work for non-image files.Merge in PT/oneposda from Fix-file-api-query to master * commit '0f29de9b6287de56f22cf35e343cf66595daf734': Fix file details api call to work for non-image files.
Michael RutherfordMichael Rutherford
0f29de9b628Fix file details api call to work for non-image files.
Quasar JaroszQuasar Jarosz
5461f1cd03fUpdate MaskingReview query to show all masking_statuses
Sonya UtechtSonya Utecht
959724b6dbebugfixes to the spreadsheet output
Quasar JaroszQuasar Jarosz
004501ea655Update api masking/visualreview to optionally return masked onlyAdded awaiting_review bool parameter to masking/visualreview route. When true, it will return only those IECs that are awaiting review. When false, it will return everything (same as before).
Michael RutherfordQuasar JaroszMichael Rutherford
e11ecd20c7dMPull request #384: Fix optionalityMerge in PT/oneposda from mirabelle_work to master * commit '9991b174be0c65d121f0f0dc0afbcc65cd02a5ff': Fix optionality
Michael RutherfordMichael Rutherford
9991b174be0Fix optionality
Quasar JaroszQuasar Jarosz
c5c28e0233dParse image values for Segmentation Storage
Michael RutherfordQuasar JaroszMichael Rutherford
989e4623cc5MPull request #383: Mirabelle workMerge in PT/oneposda from mirabelle_work to master * commit 'b97e13d45babfa6b389e53b515190b2d694aacff': Fix base return model Add FOR to IEC info endpoint, add modality and series uid to other_iecs_in_for endpoint.
Michael RutherfordMichael Rutherford
b97e13d45baFix base return model
Michael RutherfordMichael Rutherford
5fdfb58aeadAdd FOR to IEC info endpoint, add modality and series uid to other_iecs_in_for endpoint.
Quasar JaroszQuasar Jarosz
ee9fc118a82Switch ImportFromFaspex.py back to md5sum
Quasar JaroszQuasar Jarosz
05c479c31cbAdd Modality to wadsors iec metadata
Quasar JaroszQuasar Jarosz
811ddf42c5eOnly return iop/ipp if it exists, for wadors routes
Quasar JaroszQuasar Jarosz
90508a82a17Always return image_geometry even if it's missing
Michael RutherfordMichael Rutherford
7a10b946f84Cleanup IEC info endpoint query and add modality
Quasar JaroszQuasar Jarosz
b254a156693Really fix nifti vr endpoint input variable
Michael RutherfordMichael Rutherford
c46ad64c044Fix nifti vr endpoint input variable
Michael RutherfordMichael Rutherford
04a890dcfeaAdded endpoint to retrieve Nifti VR files
Quasar JaroszQuasar Jarosz
9ec41d6a1a0Update ImportInPlaceFromPublic: add visiblity list and fix digest issue
Quasar JaroszQuasar Jarosz
28843a710abAdd Series Description to IEC info endpointThis relates to PT-1262PT-1262
Quasar JaroszQuasar Jarosz
2f7e01afd26Add reviewfiles/download endpoint to IEC route