Fix bug in NewTry for parsing of output from fileNewTry calls file to determine the file type of files it has
determined are not DICOM. It uses a regex to break the result
on the first colon, but some nifti files return a file type that
contains more than one colon. Adjusting this regex to be "non-greedy"
fixes the issue so the correct type information is returned.
Improve the model verifiction for visualreview routesAlso makes a minor change to the input to visualreview/vr/values,
allowing for the body to be omitted.
Update masking/visualreview endpoint to be more specificIt now only returns IECs which need to be masked (or are rejected).
This should improve the user experience when using the Mask route in the
UI.
Pull request #398: Placeholder button, and wip new vr sciriptMerge in PT/oneposda from pathology_new_vr_system to master
* commit 'e98e37af7a69713cdc83d52e317d7f557ff6a87f':
Placeholder button, and wip new vr sciript
Pull request #395: Feature/TADMIN-1527 update simplified phi report using agreed criteria and deploy to posdaMerge in PT/oneposda from feature/TADMIN-1527-update-simplified-phi-report-using-agreed-criteria-and-deploy-to-posda to master
* commit 'eaeba9a883ed8ec255b65786d348c410e2a86a02':
Update PHI macro to add valid value and ctp check
Add parse scripts
Add new retired tags to flag csv
ignore
Pull request #394: Feature/TADMIN-1528 develop a workflow process to sync private tag knowledge base between apollo vaMerge in PT/oneposda from feature/TADMIN-1528-develop-a-workflow-process-to-sync-private-tag-knowledge-base-between-apollo-va to master
* commit 'a7fca91b471aeb67117d8f54c2d117659e2408dd':
Add ImportPrivateElementSeen script
Add ExportPrivateTagData script, row, and Workflow entry
Make SyncAllSpreadsheetOps sync all including non matching
Pull request #393: Feature/TADMIN-1529 add additional messaging to dciodvfy based on geri s macro and deploy toMerge in PT/oneposda from feature/TADMIN-1529-add-additional-messaging-to-dciodvfy-based-on-geri-s-macro-and-deploy-to to master
* commit 'fb179763517004f1f3b7a124c8faee40d68552b2':
Add dciodvfy macro to the report, and fix "Macro processed" links
Adjust new dciodvfy macro run.sh to produce correct output
First working version of dciodvfy macro
Fix line endings
Add dicodvfy macro scr...
Pull request #392: removed ross from file pathMerge in PT/oneposda from feature/parsing-of-histopathology to master
* commit 'cb76193941bd9e18334faeeeaefdc2d67e45a23a':
removed ross from file path
Pull request #391: Feature/parsing of histopathologyMerge in PT/oneposda from feature/parsing-of-histopathology to master
* commit 'e63d077530f4c587b9f10afcade9a1886148671d':
filename crop
Debug of export mostly working, need tests with actual connections
getting metadata from openslide, temporarily printing to the inbox
progress
Edits/Mapping fix
Add dciodvfy macro to the report, and fix "Macro processed" linksThe links for "Macro processed" reports are now only present on
the three reports they need to be, and the API runs the correct
macro depending on the report name.
Add new /activities endpoint for UI operations involving ActivitiesThis adds a set of endpoints under /v1/activities that will be useful
for new and exsiting UI code. This includings being able to list
all activities, list timeline entries for an activity, list details
about a specific timeline entry, and retrieve the input and output data
for a given timeline entry / subprocess.
Introduce NewApplyMasks, a complete rewrite of ApplyMasksThis version handles orphans and referencing files, and does
almost all processing itself. It does still generate an edit skeleton
for moving the pre-masked files, as that operation needs to have an
email to link to (so this script cannot create a new timepoint in
a second activity without causing issues).
Quasar Jarosz
Sonya Utecht
Michael Rutherford