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oneposda

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AuthorCommitMessageCommit dateIssues
Quasar JaroszQuasar Jarosz
b3267be3ce4Update all.sql
Quasar JaroszQuasar Jarosz
49103ca1240Fix mistake in query definition file
Quasar JaroszQuasar Jarosz
03f36482ed4Add more modules to US Multi-frame Iod
Quasar JaroszQuasar Jarosz
36ec62f2436Update dicom3tools to the latest versionThis commit actually adds a new script in the Posda container build step, which automatically determines the most recent version of dicom3tools published. It will probably work until a version other than "1.0 snapshot" is released, though it may continue to function then as well. This resolves TADMIN-1385TADMIN-1385
Quasar JaroszQuasar Jarosz
c3c84d8bc94Fix bug in BackgroundPrivateDispositionsTpDual prevented sending to NBIAA change in the parameters to ApplyPrivateDispositionUnconditionalDate2 was not implemented in BackgroundPrivateDispositionsTpDual when it was added to the other two scripts.
Quasar JaroszQuasar Jarosz
0591a1b84aaRemove duplicate file that differed only in capitlization
Bill BennettQuasar JaroszBill Bennett
62318eaaec4New way to process files received via DICOM SEND
Michael RutherfordQuasar JaroszMichael Rutherford
ae6cfbdba53fix DVH Report
Bill BennettQuasar JaroszBill Bennett
801910ef764modifications for ARIES
Sonya UtechtQuasar JaroszSonya Utecht
86eb3b77f57Add missing executable flag to BackgroundPrivateDispositionsTPDual.pl
Sonya UtechtQuasar JaroszSonya Utecht
75b4b9394c1New Private Dispostion script, should eventually replace Baseline as it uses the PM to do Baseline or Date Shift
Sonya UtechtSonya Utecht
cd0124bfcc3added Cancel Edits option to path viewer, fixed bug in path phi scan
Quasar JaroszQuasar Jarosz
61f0405a51dFix bug in PathologyCommitEdits
Quasar JaroszQuasar Jarosz
586ce85fb96Add in-place importer 2.0
Quasar JaroszQuasar Jarosz
658552b676fMMerge remote-tracking branch 'origin/master' into path-newCreateATP
Sonya UtechtSonya Utecht
31f7cb423ccadded new redacting tags and tried to better handle tag name spacing and case
Quasar JaroszQuasar Jarosz
61600ad7281Update Pydantic model for documentation and verification
Quasar JaroszQuasar Jarosz
de7f235ff46Add new endpoint to list all activities/timepoints a series occurs in
Quasar JaroszQuasar Jarosz
4f73ba6dd03Add SOP Class UID 1.2.840.10008.5.1.4.1.1.88.34 (Comprehensive 3D SR)
Quasar JaroszQuasar Jarosz
571d4ced9c9Add default mapping of port 443 for ssl support
Quasar JaroszQuasar Jarosz
7e67cb573eeAdjust startup scripts for Posda so it gets signalsIt seems to be responding to SIGTERM now, but it still doesn't shutdown quickly.
Quasar JaroszQuasar Jarosz
6e8956e98a0Make fast file process shutdown on SIGTERM
Quasar JaroszQuasar Jarosz
11672cce805Make steve shutdown on SIGTERM
Quasar JaroszQuasar Jarosz
e96452d576cMake worker nodes shutdown on SIGTERM
Quasar JaroszQuasar Jarosz
88637a791f9Make Magicka shutdown on SIGTERM
Quasar JaroszQuasar Jarosz
74782aa63a3Make thumbs shutdown on SIGTERM
Quasar JaroszQuasar Jarosz
d86cbb834baUpdate nopperabo to gracefully shutdownNow, if it is in the middle of masking when asked to shutdown, it will set the IEC back to ready-to-process, so none are missed.
Quasar JaroszQuasar Jarosz
e0562eba30eAdd Mirabelle as a submodule
Quasar JaroszQuasar Jarosz
6d1451ba67eRemove static mirabelle, preparing to add as submodule
Quasar JaroszQuasar Jarosz
0d5700a3af8Add Nopperabo and masker
Quasar JaroszQuasar Jarosz
92bf9c0624eBegin advnacing to 1.0.3
Quasar JaroszQuasar Jarosz
f920d28d752Update Mirabelle to 4c468a3d185c52be411abb3f5cb139b7dc7637ce
Quasar JaroszQuasar Jarosz
2f8e7025e88Adjust "Posda API" button to go to the OpenAPI docs
Quasar JaroszQuasar Jarosz
0ebbedaed19Modify series file list and download API endpoints to accept more paramsThis commit changes the v1/series/{series_instance_uid}/files and v1/files/series/{series_instance_uid} to accept advanced options in the series_instance_uid parameter. You can now add ":{activity_timepoint_id}" or "@{activity_id}" to limit the returned files to only the given timepoint or activity. See docs for details.
Quasar JaroszQuasar Jarosz
b8cb15b2e83Add CopyPriorTimepointExcludingSeries script
Quasar JaroszQuasar Jarosz
5a6d2d9e3e9MMerge branch 'master' into feature/TADMIN-1311-implement-prioritized-items-from-curator-feedback-on-posda-phi-spreadsheetTADMIN-1311
Michael RutherfordMichael Rutherford
f1d2c3e2484Fixed docker file for merge
Michael RutherfordMichael Rutherford
2f6297c4f66Added SC flag in SOP class check
Michael RutherfordMichael Rutherford
b3e7e8fb91bUpdate PHI macro script with sop class check and valid value filters
Michael RutherfordQuasar JaroszMichael Rutherford
607b2b7bc4fMPull request #353: Feature/TADMIN-1179 nifti curation incorporate tools justin built into posda to help tracy s teamMerge in PT/oneposda from feature/TADMIN-1179-nifti-curation-incorporate-tools-justin-built-into-posda-to-help-tracy-s-team to master * commit 'fdc15c63e985587a117082fb4be33cba3018ca8c': Fixed queries Add nifti api calls Add button definitions Add / update / improve nifti review tables and queriesTADMIN-1179
Michael RutherfordMichael Rutherford
fdc15c63e98Fixed queries
Michael RutherfordMichael Rutherford
d3bfd0642c2Add nifti api calls
Michael RutherfordMichael Rutherford
3d40aa3bc85Add button definitions
Michael RutherfordMichael Rutherford
bc3c5206332Add / update / improve nifti review tables and queries
Quasar JaroszQuasar Jarosz
ef4f1f1b76cAdd uid_root to masking/{iec} API output
Quasar JaroszQuasar Jarosz
53729178689Move to 1.0.2 images
Quasar JaroszQuasar Jarosz
c24f15c5094Add uid_root to submissions table and API endpoints for DICOM Roots
Quasar JaroszQuasar Jarosz
09404885fa3Add UID Root to DICOM Root's editor
Quasar JaroszQuasar Jarosz
04bcf43daf7Adjust posda-api so it handles SIGTERM and stops quicklyThe bash script that starts uvicorn/fastapi had to be updated to use exec, so that uvicorn becomes pid 1 inside the container. The FastAPI main script also had to be adjusted to handle SIGTERM. At this time, it just immediately exists, without doing any kind of cleanup. This should be improved in the future.
Quasar JaroszQuasar Jarosz
6add5bfdc6cAdd POSDA_PATHOLOGY_OUTPUT_PATH env var